Browsing by Author "Kihupi, N. I."

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Anthropogenic soils and land use patterns in relation to small mammal and flea abundance in plague endemic area of Western Usambara Mountains, Tanzania
(Tanzania Journal of Health Research, 2014-07) Kimaro, D. N.; Msanya, B. M.; Meliyo, J.; Hieronimo, Proches; Mwango, Sibaway; Kihupi, N. I.; Gulinck, Hubert; Deckers, Jozef, A.
Heterogeneity in the landscapes of West Usambara Mountains on land use and human activities has been reported. However, the interface of land use patterns and human modified soils with small mammal and flea abundance for possible explanation of plague has not been explored. This study was carried out to determine the link between anthropogenic soils and land use patterns on small mammal and flea abundance and the occurrence of reported plague in the Western Usambara Mountains in Tanzania. Standard soil survey methods were used to identify and describe soils and land use patterns on lower slopes and valley bottoms on which the surrounding villages are reported to have high and medium plague frequencies. The identified soils were characterised in terms of their morphological and physico-chemical properties and classified according to FAO-World Reference Base for Soil Resources. Small mammals were trapped on the same landscape positions and identified to genus/species level. Fleas were removed from the trapped small mammals, counted and identified to species level. In total 57 small mammals were captured from which 32 fleas were collected. Results show that human settlements and mixed cultivation on lower slopes and continuous vegetable cropping in the valley bottoms are dominant land use types. Intensive use of forest soils, manuring and irrigation on farms in the studied landscapes have contributed to the development of uniquely human modified soils namely Hortic Anthrosols in the lower slopes and Plaggic Irragric Hortic Anthrosols in valley bottoms. The identified anthropogenic soils and land use patterns are associated with high abundance of small mammals (Mastomys natalensis) and flea species (Xenopsylla brasiliensis and Dinopsyllus lypusus). This phenomenon is vividly apparent in the villages with medium to high plague frequencies. The study suggests that plague surveillance programmes should consider the existing relationship between anthropogenic soils, land use patterns, small mammal and flea abundance.
The effect of soil physical properties and soil microclimate on rodent burrows’ abundance and their characteristics in Western Usambara Mountains, Tanzania
(ournal of Agriculture and Ecology Research International, 2014-12-16) Meliyo, Joel, L.; Brabers, Leon; Massawe, Boniface H. J.; Msanya, B. M.; Kimaro, D. N.; Mulungu, L. S.; Kihupi, N. I.; Deckers, Jozef, A.; Gulinck, Hubert; Leirs, Herwig
The present study was carried out between September 2009 and June 2013 in Western Usambara Mountains plague focus with the aim of establishing the influence of selected soil physical properties and soil microclimate on rodent burrows’ abundance, portal orientation and use. Two landscapes with high and medium plague frequencies in Lokome and Lukozi villages were studied. In the two landscapes data were collected from 117 and 200 observation sites respectively, using 100 m x 200 m quadrats. At each quadrat crossing, a sample quadrat of 20 m x 20 m was demarcated for scanning rodent burrows whereby burrows encountered were counted and their portal orientation and burrow use described. Within each sample quadrat, selected soil physical properties including thickness of the soil genetic horizons and soil dry consistence were determined. Soil samples were collected from each horizon for laboratory texture analysis. Temperature (surface and subsurface to a depth 10 cm) and relative humidity at a depth of 10 and 30 cm were collected using infrared, thermo-couple thermometers and i-Buttons. Descriptive statistics, ANOVA and logistic regression were used to analyse the data by R-software. There were significant (P=.0001) differences between the two landscapes regarding topsoil depth, infrared temperature, relative humidity and rodent burrows’ abundance. In the high plague frequency landscape there was a significant influence (P=.05) of topsoil horizon thickness on rodent burrows’ abundance and use. Results also indicate that soil temperature to a depth of 10 cm was significantly (P=.05) correlated with rodent burrow use. Likewise, in the medium plague frequency landscape, soil physical properties and soil microclimate significantly (P=.0001) discouraged rodent burrowing. It was concluded that soil physical and soil microclimate encouraged and discouraged burrowing in the high and the medium plague frequency landscapes, respectively. The landscape with high rodent burrows’ abundance corresponded with high plague frequency records.
Landform and surface attributes for prediction of rodent burrows in the Western Usambara Mountains, Tanzania
(Tanzania Journal of Health Research, 2014-07) Meliyo, Joel, L.; Massawe, Boniface H. J.; Msanya, B. M.; Kimaro, D. N.; Hieronimo, Proches; Mulungu, Loth S.; Kihupi, N. I.; Deckers, Jozef, A.; Gulinck, Hubert; Leirs, Herwig
Previous studies suggest that rodent burrows, a proxy for rodent population are important for predicting plague risk areas. However, studies that link landform, surface attributes and rodent burrows in the Western Usambara Mountains in Tanzania are scanty. Therefore, this study was conducted in plague endemic area of the Western Usambara Mountains in northern, Tanzania, to explore the relationship between rodent burrows, and landform and surface attributes. The study was carried out in three areas corresponding to high (Lokome), medium (Lukozi) and low (Mwangoi) frequency of reported plague cases. Data were collected from 117, 200 and 170 observation sites for Lokome, Lukozi and Mwangoi, respectively using 100 m x 200 m quadrats. Remote sensing and field surveys were used to collect data on landform and surface attributes. Rodent burrows were surveyed and quantified by counting the number of burrows in 20m x 20m grids demarcated on the main 100m x 200m quadrats. The collected data were analysed in R software using boosted regression trees (BRT) technique. Rodent burrows were found at an elevation of above 1600m in the high and medium plague frequency landscapes. No burrows were found in the low plague frequency landscape situated below 1500m. BRT analysis shows a significant relationship between landform characteristics and rodent burrows in both high and medium plague frequency landscapes. Overall, elevation and hillshade are the most important determinants of rodent burrow distribution in the studied landscapes. It is concluded that in high altitudes, specific landform attributes (hill-shade, slope, elevation) and vegetation cover- favour rodent burrowing.
Predicting small mammal and flea abundance using landform and soil properties in a plague endemic area in Lushoto District, Tanzania
(Tanzania Journal of Health Research, 2014-07) Meliyo, Joel, L.; Kimaro, D. N.; Msanya, B. M.; Mulungu, L. S.; Hieronimo, Proches; Kihupi, N. I.; Gulinck, Hubert; Deckers, Jozef, A.
Small mammals particularly rodents, are considered the primary natural hosts of plague. Literature suggests that plague persistence in natural foci has a root cause in soils. The objective of this study was to investigate the relationship between on the one hand landforms and associated soil properties, and on the other hand small mammals and fleas in West Usambara Mountains in Tanzania, a plague endemic area. Standard field survey methods coupled with Geographical Information System (GIS) technique were used to examine landform and soils characteristics. Soil samples were analysed in the laboratory for physico-chemical properties. Small mammals were trapped on pre-established landform positions and identified to genus/species level. Fleas were removed from the trapped small mammals and counted. Exploration of landform and soil data was done using ArcGIS Toolbox functions and descriptive statistical analysis. The relationships between landforms, soils, small mammals and fleas were established by generalised linear regression model (GLM) operated in R statistics software. Results show that landforms and soils influence the abundance of small mammals and fleas and their spatial distribution. The abundance of small mammals and fleas increased with increase in elevation. Small mammal species richness also increases with elevation. A landform-soil model shows that available phosphorus, slope aspect and elevation were statistically significant predictors explaining richness and abundance of small mammals. Fleas’ abundance and spatial distribution were influenced by hill-shade, available phosphorus and base saturation. The study suggests that landforms and soils have a strong influence on the richness and evenness of small mammals and their fleas’ abundance hence could be used to explain plague dynamics in the area.
Selected soil properties for prediction of plague vectors and reservoirs in Mavumo area, Lushoto district, Tanzania
(RUFORUM, 2010-09) John, B. H.; Msanya, B. M.; Kimaro, D. N.; Meliyo, J. L.; Mulungu, Loth S.; Kihupi, N. I.; Gulinck, H.
The importance of selected soil properties with respect to occurrence of plague vectors and reservoirs was studied in Lushoto District, Tanzania. Plague reservoirs showed significant correlation (p<0.05) with subsoil percent clay, topsoil percent total nitrogen, topsoil C/N, topsoil pH and topsoil DTPA extractable Cu. Plague vectors’ occurrence showed significant correlation (p<0.05) with effective soil depth, topsoil percent total nitrogen, topsoil C/N, subsoil percent organic carbon and with topsoil DTPA extractable Zn. It is recommended that plague disease control should also employ knowledge on relationships between soil properties and plague reservoirs and vectors.
Status and variability of soil micronutrients with landforms in the plague focus of Western Usambara Mountains, Tanzania
(International Journal of Plant & Soil Science, 2014-11-13) Meliyo, Joel L.; Massawe, Boniface H. J.; Brabers, Leon; Msanya, B. M.; Kimaro, D. N.; Kihupi, N. I.; Deckers, Jozef A.; Gulinck, Hubert; Leirs, Herwig
A study was carried out in Western Usambara, Tanzania to assess the status of soil micronutrients across three geomorphic units viz., plain, escarpment and plateau in order to provide essential information for on-going studies on plague epidemiology. Nineteen soil profiles were opened, described and 54 samples collected for laboratory analysis. Standard methods were employed to analyse soil physical and chemical properties. Micronutrients Fe, Mn, Cu and Zn were extracted by DTPA and quantities estimated spectrophotometrically. Spatial distribution of micronutrients along the geomorphic units and within pedons was studied using descriptive statistics, correlation, ANOVA and means separation was done by Tukey’s test at 95 % confidence interval in Minitab 14 software. Relationships between small mammal and flea abundance and micronutrients were established by regression analysis using R-software. Results showed that DTPA extractable Fe, Mn, Cu and Zn were variable. Fe ranged from 2.13 to 399.4 mg/kg soil, with a mean of 65.3 mg Fe/kg soil across the geomorphic units. Mn ranged from 0.59 to 266.28 mg Mn/kg soil while Cu ranged from 0.25 to 8.19 mg/kg soil with a mean of 2.98 mg Cu/kg soil. Results show that Zn ranged from 0.08 to 19.6 mg Zn/kg soil, with a mean of 1.16 mg Zn/kg soil. Generally, micronutrients declined with soil depth. The micronutrient levels were high in the geomorphic units with the trend: plateau > escarpment > plain. Iron was found to significantly P<.01 and P<.05 influence plague hosts and vectors. The study concludes that micronutrients vary with soils and geomorphic units. Iron had positive influence on plague hosts and vectors. Further research on the relationships between micronutrients, and plague hosts and vectors in different plague foci in the country is recommended.
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(2004-12) Kimaro, D. N.; Msanya, B. M.; Kihupi, N. I.
A study covering an area of 358 km 2 was conducted at Wami Plains in Mvomero district, Tanzania to assess the suitability of land for various land use types with emphasis on smallholder low input rainfed maize, rice and extensive grazing. Expert knowledge captured in ALES computer programme was used to carry out physical and economic land suitability classification with respect to three major land utilisation types. Decision trees to assess the potentials and constraints of the land for the three land utilisation types were developed in ALES programme. Physical and economic land suitability classification and ALES predicted yields and gross margins are presented. The results indicate that about 90% of the area is physically moderately suitable and economically highly suitable for extensive grazing. Only about 43% is both physically and economically suitable for maize production and about 57% is either marginally suitable or not suitable for maize production. On the other hand about 57% of the studied area is marginally suitable for rice production while 43% is not both physically and economically suitable for this LUT. The most limiting factors for the production of the three studied LUTs are poor soil fertility, poor soil drainage conditions, tsetse flies and ticks infestation and soil erosion hazards. From this study it is also concluded that extensive grazing is economically more profitable in the area compared to the production of maize and rice. Basing on the current farmers observed and predicted yields there are high possibilities for obtaining higher yields from livestock under improved management levels. Maize production is recommended as the second important LUT in the area provided that soil fertility problems and poor drainage conditions are improved. Rice production is economically the third land utilisation type. Higher rice yields could be obtained if farmers were able to invest more on fertiliser use. This forms a strong base in favour of high investment in the area given the potential marketing possibilities in the expanding cities and towns in Tanzania and in East Africa.